ig_evolution_results

Clonal analysis of publicly available antibody repertoires performed using IgEvolution tool

Flu vaccination study - I

PRJNA324093, Ellebedy et al., Nat Immunol, 2016

Dataset Run accession numbers Link to IgEvolution results
Donor4 SRR3620047 (HA-positive ASCs, 7th day)
SRR3620069 (HA-positive activated B cells, 7th day)
SRR3620102 (HA-positive activated B cells, 14th day)
SRR3620028 (HA-positive memory B cells, 28th day)
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Donor5 SRR3620037 (HA-positive ASCs, 7th day)
SRR3620039 (HA-positive activated B cells, 7th day)
SRR3620042 (HA-positive activated B cells, 14th day)
SRR3620046 (HA-positive memory B cells, 28th day)
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Donor6 SRR3620055 (HA-positive ASCs, 7th day)
SRR3620057 (HA-positive activated B cells, 7th day)
SRR3620061 (HA-positive activated B cells, 14th day)
SRR3620065 (HA-positive memory B cells, 28th day)
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Donor8 SRR3620074 (HA-positive ASCs, 7th day)
SRR3620076 (HA-positive activated B cells, 7th day)
SRR3620079 (HA-positive activated B cells, 14th day)
SRR3620084 (HA-positive memory B cells, 28th day)
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Flu vaccination study - II

PRJNA512111, Horns et al., PNAS, 2019

Dataset Run accession numbers Link to IgEvolution results
Donor1 SRR8377659 (PBMC taken after flu vaccination) Start browsing…
Donor3 SRR8377660 (PBMC taken after flu vaccination) Start browsing…
Donor4 SRR8377663 (PBMC taken after flu vaccination) Start browsing…
Donor5 SRR8377656 (PBMC taken after flu vaccination) Start browsing…

Study of intestinal antibody repertoires

PRJNA355402, Magri et al., Immunity, 2017

Dataset Run accession numbers Link to IgEvolution results
Donor1 SRR5063099 (memory B cells, IgA, ileum mucosa)
SRR5063100 (plasma B cells, IgA, colon mucosa)
SRR5063104 (memory B cells, IgA, colon mucosa)
SRR5063107 (plasma B cells, IgA, ileum mucosa)
SRR5063089 (plasma B cells, IgM, ileum mucosa)
SRR5063090 (plasma B cells, IgM, colon mucosa)
SRR5063105 (memory B cells, IgM, ileum mucosa)
SRR5063114 (memory B cells, IgM, colon mucosa)
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Donor2 SRR5063082 (plasma B cells, IgA, ileum mucosa)
SRR5063083 (plasma B cells, IgA, colon mucosa)
SRR5063093 (memory B cells, IgA, colon mucosa)
SRR5063115 (memory B cells, IgA, ileum mucosa)
SRR5063095 (plasma B cells, IgM, ileum mucosa)
SRR5063098 (memory B cells, IgM, colon mucosa)
SRR5063111 (memory B cells, IgM, ileum mucosa)
SRR5063113 (plasma B cells, IgM, colon mucosa)
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Donor3 SRR5063086 (memory B cells, IgA, colon mucosa)
SRR5063096 (memory B cells, IgA, ileum mucosa)
SRR5063101 (plasma B cells, IgA, colon mucosa)
SRR5063106 (plasma B cells, IgA, ileum mucosa)
SRR5063087 (plasma B cells, IgM, colon mucosa)
SRR5063094 (memory B cells, IgM, colon mucosa)
SRR5063102 (memory B cells, IgM, ileum mucosa)
SRR5063103 (plasma B cells, IgM, ileum mucosa)
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Donor4 SRR5063088 (plasma B cells, IgA, colon mucosa)
SRR5063091 (plasma B cells, IgA, ileum mucosa)
SRR5063109 (memory B cells, IgA, ileum mucosa)
SRR5063116 (memory B cells, IgA, colon mucosa)
SRR5063085 (memory B cells, IgM, colon mucosa)
SRR5063108 (plasma B cells, IgM, colon mucosa)
SRR5063110 (plasma B cells, IgM, ileum mucosa)
SRR5063112 (memory B cells, IgM, ileum mucosa)
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Study of rat antibody repertoires

PRJNA386462, VanDuijn et al., Front Immunol, 2017

Dataset Run accession numbers Link to IgEvolution results
Rat1 SRR5534359 (PBMC after vaccination with DNP) Start browsing…
Rat2 SRR5534360 (PBMC after vaccination with DNP) Start browsing…
Rat3 SRR5534361 (PBMC after vaccination with DNP) Start browsing…
Rat4 SRR5534362 (PBMC after vaccination with DNP) Start browsing…
Rat5 SRR5534363 (PBMC after vaccination with DNP) Start browsing…
Rat6 SRR5534364 (PBMC after vaccination with HuD) Start browsing…
Rat7 SRR5534365 (PBMC after vaccination with HuD) Start browsing…
Rat8 SRR5534366 (PBMC after vaccination with HuD) Start browsing…
Rat9 SRR5534367 (PBMC after vaccination with HuD) Start browsing…
Rat10 SRR5534368 (PBMC after vaccination with HuD) Start browsing…